[Bioc-devel] ¿A useful addition to MotifDb package?

[Paul Shannon]

Hi Steve,

Very timely, very helpful!   Just yesterday I proposed to Martin, as a taks for the coming sprint:

 4) Add the new TF PWMs from ENCODE into MotifDb

I had not yet gotten as far as locating the data at ebi.  Thanks!

If you care to take a look, perhaps comment, this Bioc workflow became visible yesterday, but has not yet been generally announced:

  http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/

 - Paul

On Oct 9, 2012, at 7:53 AM, Steve Lianoglou wrote:

> Hi Paul + devs,
> 
> Alex Reynolds's answer to this biostar post:
> http://www.biostars.org/post/show/54511
> 
> Lead me to this paper:
> http://www.sciencedirect.com/science/article/pii/S0092867412006393
> 
> and this dataset:
> ftp://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/byDataType/footprints/README
> 
> Which made me write this email.
> 
> -steve
> 
> -- 
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
> | Memorial Sloan-Kettering Cancer Center
> | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact