[Bioc-devel] getting Rscript for development version packages

[Dan Tenenbaum]

On Mon, Nov 26, 2012 at 10:30 AM, Richard Friedman
<friedman at cancercenter.columbia.edu> wrote:
> Tim and Dan,
>
> Thank you both for for your replies. Dan's worked but it gave
> me the released as distinct from the development version,


My mistake. Substitute "devel" for "release" in both URLs and you'll
get what you want.


I couldn't
> get Tim's to work (my fault not Tim's) but I suspect that it would
> have also given me the released version.

It depends which version of the package you had installed.
Dan


 I found I could get the development
> version like this:
>
> http://www.bioconductor.org/packages/2.12/bioc/html/easyRNASeq.html
>
>
> Best wishes,
> Rich
> Richard A. Friedman, PhD
> Associate Research Scientist,
> Biomedical Informatics Shared Resource
> Herbert Irving Comprehensive Cancer Center (HICCC)
> Lecturer,
> Department of Biomedical Informatics (DBMI)
> Educational Coordinator,
> Center for Computational Biology and Bioinformatics (C2B2)/
> National Center for Multiscale Analysis of Genomic Networks (MAGNet)
> Room 824
> Irving Cancer Research Center
> Columbia University
> 1130 St. Nicholas Ave
> New York, NY 10032
> (212)851-4765 (voice)
> friedman at cancercenter.columbia.edu
> http://cancercenter.columbia.edu/~friedman/
>
> In memoriam, Ray Bradbury
>
> On Nov 26, 2012, at 1:08 PM, Tim Triche, Jr. wrote:
>
> R CMD Stangle packageName/inst/doc/VignetteName.Rnw
>
> or
>
> R CMD Stangle packageName/vignettes/VignetteName.Rnw
>
> will deposit a file VignetteName.R into the corresponding directory and
> wah-lah, tout va bien.
>
>
>
> On Mon, Nov 26, 2012 at 10:04 AM, Richard Friedman
> <friedman at cancercenter.columbia.edu> wrote:
>>
>> Dear Bioconductor Developers,
>>
>>         Released versions of Bioconductor packages generally come with an
>> R script which
>> contains what is done in the vignettes. Are these also available for
>> development versions?
>> If so, how can I get the script for a given package? I am interest in
>> easyRNASeq in
>> particular.
>>
>> Thanks and best wishes,
>> Rich
>>
>> Richard A. Friedman, PhD
>> Associate Research Scientist,
>> Biomedical Informatics Shared Resource
>> Herbert Irving Comprehensive Cancer Center (HICCC)
>> Lecturer,
>> Department of Biomedical Informatics (DBMI)
>> Educational Coordinator,
>> Center for Computational Biology and Bioinformatics (C2B2)/
>> National Center for Multiscale Analysis of Genomic Networks (MAGNet)
>> Room 824
>> Irving Cancer Research Center
>> Columbia University
>> 1130 St. Nicholas Ave
>> New York, NY 10032
>> (212)851-4765 (voice)
>> friedman at cancercenter.columbia.edu
>> http://cancercenter.columbia.edu/~friedman/
>>
>> In memoriam, Ray Bradbury
>>
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
>
> --
> A model is a lie that helps you see the truth.
>
> Howard Skipper
>
>