[Bioc-devel] error message upon installing easyRNASeq

[Dan Tenenbaum]

On Wed, Nov 14, 2012 at 11:58 AM, Richard Friedman
<friedman at cancercenter.columbia.edu> wrote:
>
> On Nov 14, 2012, at 2:52 PM, Dan Tenenbaum wrote:
>
>
> It looks like the binary version of RCurl was built using R 2.15.1 and
> not R-devel.
>
> You can get around this by installing RCurl from source:
> source("http://bioconductor.org/biocLite.R")
> biocLite("RCurl", type="source")
>
> This may require that you have Xcode installed.
>
> Dan
>
>
>
> Dan,
>
> The installation ran with 2 warning messages:
>
> HAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2
> -I/usr/local/include    -fPIC  -g -O2  -c json.c -o json.o
> json.c: In function ‘UTF8Encode2BytesUnicode’:
> json.c:44: warning: comparison is always true due to limited range of data
> type
>
> DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2
> -I/usr/local/include    -fPIC  -g -O2  -c myUTF8.c -o myUTF8.o
> myUTF8.c: In function ‘StringValue’:
> myUTF8.c:284: warning: passing argument 1 of ‘Rf_mkCharLenCE’ from
> incompatible pointer type
>
> Are these causes for concern?
>


I don't think so. The main thing is that RCurl built successfully. Let
us know if you are still running into problems.

Dan


> THANKS!
> Rich
>
>
>
>