[Bioc-devel] error message upon installing easyRNASeq

[Richard Friedman]

On Nov 14, 2012, at 2:29 PM, Steve Lianoglou wrote:

> Howdy,
> 
> I'm having a hard time parsing this error of yours:
> 
> On Wed, Nov 14, 2012 at 1:13 PM, Richard Friedman
> <friedman at cancercenter.columbia.edu> wrote:
> [snip]
>> Loading required package: bitops
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so':
>> 
>> dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so,
>> 6): Library not loaded:
>> /Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib
>>  Referenced from:
>> /Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so
>>  Reason: image not found
>> Error: package or namespace load failed for ‘RCurl’
> 
> Why am I seeing something about version 2.15 in there?

Steve,

I am not sure but I installed it with the instructions to leave the old stable version
of R. I have many packages installed I know it will work. 
My GUI boots with R2.16. Is there a way to switch the GUI back and forth between R2.15.2 
and R2.16? I can start each of them in a command line window, but not the GUI?

> 
> Out of curiosity, what is the output of `.libPaths()` when you're running 2.16?

> .libPaths()
[1] "/Library/Frameworks/R.framework/Versions/2.16/Resources/library"
> 

Thanks and best wishes,
Rich