[Bioc-devel] Can't install my package KEGGprofile from bioconductor website
slzhao at sibs.ac.cn
Thu Nov 1 13:08:15 CET 2012
Thanks for the reply.
I agreed with you that it might be related with the BiocInstaller
version. I used:
And chose "y" to upgrade all the packages.
Then biocLite("KEGGprofile") in BiocInstaller 1.8.3 works for me.
2012/11/1 Vincent Carey <stvjc at channing.harvard.edu>:
> installed successfully with R 2.15.1, note the BiocInstaller version which
> is different from yours. Please upgrade and try again with full sessionInfo
> if you have further problems
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
> Installing package(s) 'KEGGprofile'
> trying URL
> Content type 'application/x-gzip' length 431905 bytes (421 Kb)
> opened URL
> downloaded 421 Kb
> * installing *source* package 'KEGGprofile' ...
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> 'KEGGprofile.Rnw' using 'latin-9'
> ** testing if installed package can be loaded
> * DONE (KEGGprofile)
> On Thu, Nov 1, 2012 at 1:31 AM, slzhao <slzhao at sibs.ac.cn> wrote:
>> Hi all,
>> I am the author of the package KEGGprofile. Some persons told me that
>> they can't install KEGGprofile package via R code:
>> The result was:
>> BioC_mirror: http://bioconductor.org
>> Using R version 2.15, BiocInstaller version 1.4.9.
>> Installing package(s) 'KEGGprofile'
>> Warning message:
>> package‘KEGGprofile’is not available (for R version 2.15.1)
>> I have tested it in R 2.15.1 and R 2.14.0 and found it was true. I
>> have also tested some other packages in a smilar way and they can be
>> So I downloaded the Zip file for KEGGprofile package from the website
>> and installed it local. It can be installed but when I use
>> library(KEGGprofile), The result was:
>> Error in eval(expr, envir, enclos) :
>> could not find function ".getNamespace"
>> In addition: Warning message:
>> package ‘KEGGprofile’ was built under R version 2.16.0
>> Error : unable to load R code in package ‘KEGGprofile’
>> Error: package/namespace load failed for ‘KEGGprofile’
>> Then I used the Zip file build by myself. And it was completely OK in
>> installation and running.
>> I have also checked the checkResults page for the package, and the report
>> is OK.
>> Thank you!
>> Shilin Zhao
>> Bioc-devel at r-project.org mailing list
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