[Bioc-devel] Bioconductor code search (beta)

[Itoshi NIKAIDO]

Hi Florian

Thank you for your response.

I changed setting of snippet size and allow multi hits in one file.
Maybe, source code snippets are enriched in search result more than
comment out lines. And, i would like to consider whether i implement or not
your idea.

Thanks

itoshi

Itoshi NIKAIDO, Ph.D.
FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2


On Wed, Jun 6, 2012 at 10:21 PM, Hahne, Florian
<florian.hahne at novartis.com> wrote:
> Cool. Would it be worthwhile to restrict the full-text indexing to actual
> code segments only. I seemed to find a lot of entries that are commented
> out, mainly developer-specific code documentation sections in the actual
> code files.
> Cheers,
> Florian
>
>
> Florian Hahne
> Novartis Institute For Biomedical Research
> Translational Sciences / Preclinical Safety / PCS Informatics
> Expert Data Integration and Modeling Bioinformatics
> CHBS, WKL-135.2.26
> Novartis Institute For Biomedical Research, Werk Klybeck
> Klybeckstrasse 141
> CH-4057 Basel
> Switzerland
> Phone: +41 61 6967127
> Email : florian.hahne at novartis.com
>
>
>
>
>
>
>
> On 6/5/12 8:06 PM, "Itoshi NIKAIDO" <dritoshi at gmail.com> wrote:
>
>>Hi Martin
>>
>>Thank you for your quick response. Now, i am improving a tokenizer
>>to optimize index of database.
>>
>>Itoshi
>>
>>Itoshi NIKAIDO, Ph.D.
>>FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2
>>
>>
>>On Wed, Jun 6, 2012 at 2:36 AM, Martin Morgan <mtmorgan at fhcrc.org> wrote:
>>> On 6/5/2012 10:33 AM, Itoshi NIKAIDO wrote:
>>>>
>>>> Dear bioconductor developers
>>>>
>>>> I'm Itoshi Nikaido, developer of BrainStars package and maintainer of
>>>> Japan mirror of Bioconductor.
>>>>
>>>> http://www.bioconductor.org/packages/release/bioc/html/BrainStars.html
>>>> http://bioconductor.jp/
>>>>
>>>> Today, I am happy to announce of opening a full code search engine for
>>>> all bioconductor package (only devel version).  The site has following
>>>> features:
>>>>
>>>> - fast full text search
>>>> - code highlighting
>>>> - facet search by package name
>>>>
>>>> This site is beta version. I have some plans to improve and add
>>>>functions.
>>>>
>>>> - Optimization of tokenizer
>>>> - Query keyword highlighting
>>>> - Linking to official SVN site in each code
>>>> - Permalink have to be change nonsense code id to package file path
>>>>
>>>> and so on.
>>>>
>>>> Bioconductor Code Search
>>>> http://search.bioconductor.jp/
>>>>
>>>> If you have idea for improving the site, Please comment to me.
>>>
>>>
>>> neat; I searched for
>>>
>>> trimLRPatterns
>>>
>>> and got hits in ShortRead but not Biostrings (where it is defined).
>>>
>>> Martin
>>>>
>>>>
>>>> Thanks
>>>>
>>>> --
>>>> Itoshi NIKAIDO, Ph.D.
>>>> RIKEN Center for Developmental Biology
>>>> D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
>>>> Kobe, Hyogo 650-0047, Japan
>>>> http://www.hackingisbelieving.org/
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>>
>>>
>>> --
>>> Dr. Martin Morgan, PhD
>>> Fred Hutchinson Cancer Research Center
>>> 1100 Fairview Ave. N.
>>> PO Box 19024 Seattle, WA 98109
>>>
>>
>>_______________________________________________
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>