[Bioc-devel] virtualArray problems reported by the "Build/check report" for BioC 2.10

[Dan Tenenbaum]

On Wed, Jul 11, 2012 at 1:07 AM, Andreas Heider
<aheider at trm.uni-leipzig.de> wrote:
> Oh, I'm sorry!
> I just saw, that GEOquery itself failed to built!
>

Yes, and this looks to be due to continuing problems with NCBI/GEO.
This has been reported before
(https://stat.ethz.ch/pipermail/bioconductor/2012-February/043247.html)
and the suggestion was to wait a while; however this has been going on
for a couple of days, so maybe contacting NCBI would be constructive.

Dan


> 2012/7/11 Andreas Heider <aheider at trm.uni-leipzig.de>
>
>> Dear mailing list,
>> I recieved the following error from compilaltion on lamb:
>>
>> "Error in function (type, msg, asError = TRUE)  :
>>   Server denied you to change to the given directory
>> Execution halted"
>>
>> Seems, that the compilation stops at chunk 3 of the vignette, however, I did not do any changes to my code in the last weeks.
>> The chunk uses the GEOquery package, were there any fundamental changes to that package?
>>
>>
>> Thanks,
>> Andreas
>>
>>
>>
>> 2012/7/11 <BBS-noreply at bioconductor.org>
>>
>> [This is an automatically generated email. Please don't reply.]
>>>
>>> Hi virtualArray maintainer,
>>>
>>> According to the "Build/check report" for BioC 2.10,
>>> the virtualArray package has the following problem(s):
>>>
>>>   o ERROR for 'R CMD build' on lamb2. See the details here:
>>>
>>> http://bioconductor.org/checkResults/2.10/bioc-LATEST/virtualArray/lamb2-buildsrc.html
>>>
>>> Please take the time to address this then use your Subversion account
>>> when you are ready to commit a fix to your package.
>>>
>>> Notes:
>>>
>>>   * This was the status of your package at the time this email was sent
>>> to you.
>>>     Given that the online report is updated daily (in normal conditions)
>>> you
>>>     could see something different when you visit the URL(s) above,
>>> especially if
>>>     you do so several days after you received this email.
>>>
>>>   * It is possible that the problems reported in this report are false
>>> positives,
>>>     either because another package (from CRAN or Bioconductor) breaks your
>>>     package (if yours depends on it) or because of a Build System problem.
>>>     If this is the case, then you can ignore this email.
>>>
>>>   * Please check the report again 24h after you've committed your changes
>>> to the
>>>     package and make sure that all the problems have gone.
>>>
>>>   * If you have questions about this report or need help with the
>>>     maintenance of your package, please use the Bioc-devel mailing list:
>>>
>>>       http://bioconductor.org/help/mailing-list/
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>>
>>
>
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