[Bioc-devel] Bioconductor SVN

[Kasper Daniel Hansen]

You should use tools::resaveRdaFiles to fix this.  You do

library(tools)
save(object, file = "object.rda")
resaveRdaFiles("object.rda")

then the new rda file is saved as compressed as possible, and you can
commit this rda file to the source repository.

Kasper


On Wed, Jul 4, 2012 at 6:14 AM, Siebourg  Juliane
<juliane.siebourg at bsse.ethz.ch> wrote:
> Hi,
>
> I have a question regarding the Bioconductor source control repository. I was wondering whether I should upload the original sources or the built version of a package. I could not find the answer anywhere, and the reason I am asking this is that I get the following warning from the daily BioC 2.11 build/check report during the check:
>
> checking data for ASCII and uncompressed saves ... WARNING
>
>   Note: significantly better compression could be obtained
>         by using R CMD build --resave-data
>
> I currently commit the sources to the SVN before building them. If I build the package using the --resave-data option and then run R CMD check it, the warning does not show anymore. Should I rather commit the built version of the package to the svn, in oder to get rid of the warning, or is this nothing severe anyways?
>
> Thanks,
>
> Juliane
>
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