[Bioc-devel] Package loading sequence

Martin Morgan mtmorgan at fhcrc.org
Mon Jan 16 19:47:21 CET 2012

On 01/16/2012 05:32 AM, Benilton Carvalho wrote:
> Hi,
> I wonder if anyone could help me identifying the source of the following
> issue:
> On R-devel, r58090, I load the latest devel version of crlmm
> library(crlmm)
> And I get
> No methods found in "oligoClasses" for requests: order

crlmm hasn't built successfully on devel for quite a while


maybe it is just that oligoClasses and crlmm are out of sync? Installing 
crlmm from source seems to cure this problem?


> (this MSG is right before "welcome to crlmm version 1.13.0")
> Given the message, I expected to find an import "order" from oligoClasses
> in crlmms namespace, but that does not seem to be the case.
> The welcome message is defined on .onAttach(), so whatever is looking for
> order in oligoClasses happens before that... Any suggestions on where to
> look? I've looked at both namespace files and searched everything in R/ for
> both packages.
> Thoughs?
> Thanks a lot,
> Benilton
> 	[[alternative HTML version deleted]]
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