[Bioc-devel] R web interface

Robert M. Flight robert.flight at louisville.edu
Thu Aug 9 19:41:01 CEST 2012

Have you looked at the Galaxy project (usegalaxy.org, and
getgalaxy.org)? A lot of the tools there use R, and there is a recent
initiative to be able to easily expose R functions as Galaxy tools
using the RGalaxy package in Bioconductor. From your description of
how analyses are described, it sounds very similar to what goes into
making a tool available in Galaxy.



Robert M. Flight, Ph.D.
University of Louisville Bioinformatics Laboratory
University of Louisville
Louisville, KY

PH 502-852-1809 (HSC)
PH 502-852-0467 (Belknap)
EM robert.flight at louisville.edu
EM rflight79 at gmail.com

The most exciting phrase to hear in science, the one that heralds new
discoveries, is not "Eureka!" (I found it!) but "That's funny ..." -
Isaac Asimov

On Wed, Aug 8, 2012 at 3:08 AM, Sjoerd Vosse <sjoerdvos at yahoo.com> wrote:
> Ah thanks for the tip, I'll check it out!
> Message: 2
> Date: Tue, 7 Aug 2012 10:45:35 -0700
> From: "Kieran O'Neill" <koneill at bccrc.ca>
> To: "bioc-devel at r-project.org" <bioc-devel at r-project.org>
> Subject: Re: [Bioc-devel] R web interface
> Message-ID:
>     <B2B905CD6A0E134E9C2347E3B7BF7C8C0303D06FF41B at crcmail4.BCCRC.CA>
> Content-Type: text/plain; charset="us-ascii"
> I
>  know our lab uses GenePattern for this purpose. I think it fulfils all
> of your requirements, and is quite mature (and free) software.
> http://www.broadinstitute.org/cancer/software/genepattern/
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

More information about the Bioc-devel mailing list