[Bioc-devel] problem installing VariantAnnotation devel version

[Martin Morgan]

On 08/05/2012 11:36 AM, Augusto Rendon wrote:
> Hello,
>
> I am trying to install the development version of the VariantAnnotation
> devel (1.3.18) package
>
> and I keep getting this error:
> Error : object ‘get_xsbasetypes_conversion_lookup’ is not exported by
> 'namespace:Biostrings'
> ERROR: lazy loading failed for package ‘VariantAnnotation’
>
> any clues?

Likely it is an out-of-date package. Try

   source('http://bioconductor.org/biocLite.R')
   biocLite(character())

to be prompted to update old packages.

Does biocLite know that you are using the devel version of Bioconductor?

http://bioconductor.org/developers/useDevel/

Martin

>
> thanks,
>
> a
>
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>
>
>
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