[Bioc-devel] installation of developed package

[Steve Lianoglou]

Hi,

On Fri, Sep 16, 2011 at 8:56 AM, Willem Ligtenberg
<willem.ligtenberg at openanalytics.eu> wrote:
> Hi Andreas,
>
> You can use:
> R CMD INSTALL yourPackage.tar.gz
>
> To install a tar.gz package.

Installing from the command line still won't auto-fetch the dependencies.

Andreas: why don't you just install the deps manually, then install
your package last?

In a "normal working environment," R will auto-fetch the deps just
fine when repos != NULL.

-steve

>
> Kind regards,
>
> Willem
>
> On Fri, Sep 16, 2011 at 14:47, Andreas Heider
> <aheider at trm.uni-leipzig.de> wrote:
>> Dear mailing list,
>> I am trying to install a source package developed by me into a fresh R
>> installation, so I can test if everything works on a non-development system.
>> However, I tried install.packages(repos=NULL) which complains, that it cant
>> install the dependencies, because it does not attempt to fetch them from the
>> repositories.
>>
>> So here is my question:
>>
>> How can I install a package represented as a *tar.gz file including it's
>> dependencies?
>>
>> Thanks, Andreas
>>
>>        [[alternative HTML version deleted]]
>>
>> _______________________________________________
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
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>



-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact