[Bioc-devel] make check timing

Hervé Pagès hpages at fhcrc.org
Tue Oct 4 22:57:02 CEST 2011


Hi Kasper,

On 11-10-04 09:04 AM, Dan Tenenbaum wrote:
> Hi Kasper,
>
> On Oct 3, 2011 7:37 PM, "Kasper Daniel Hansen"<kasperdanielhansen at gmail.com>
> wrote:
>>
>> The current guideline is that it cannot take more than 5 minutes to
>> run R CMD check.  It looks as if R-2.14 first run all R code in the
>> vignettes and then builds the vignette (!!).  This implies that the
>> total time for R CMD check includes 2x time it takes to build
>> vignette.   How is this handled wrt 5 minute limit?

Good point. I guess we should modify our guidelines to say something
like:

   The package should require less than 5 minutes to run
   R CMD check --no-rebuild-vignettes.
   Using the --no-rebuild-vignettes option ensures that the
   Sweave vignette is built only once.

Will do.

Cheers,
H.

>
> On the build system, check is run with the --no-vignettes option.
>
> Dan
>
>> Kasper
>>
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
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>
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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