[Bioc-devel] Installing Geoquery on R version 2.13.1

[Radhika Malik]

Hi Steve,

Thanks for your reply. I'm trying to follow your instructions. First I
was getting the error that it cannot find RCurl. I downloaded the
binary for Rcurl and installed using--


I installed RCurl using R CMD INSTALL /Users/Radhika/Desktop/RCurl_1.7-0.tgz

but now am getting this error--

Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so,
6): Library not loaded:
/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libR.dylib
  Referenced from:
/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so
  Reason: image not found
Error: package/namespace load failed for 'GEOquery'

What am I missing?

Thanks,
Radhika


On Mon, Nov 28, 2011 at 11:17 PM, Steve Lianoglou
<mailinglist.honeypot at gmail.com> wrote:
> Hi,
>
> As shown here:
> http://www.bioconductor.org/install/
>
> The easiest way to install bioconductor packages is via `biocLite`. Just:
>
> R> source("http://bioconductor.org/biocLite.R")
> R> biocLite('GEOquery')
>
> This will install the appropriate version of the bioconductor packages
> for your version of R.
>
> Also, if you're not "stuck" on R-2.13.x for any particular reason, you
> might as well update to the latest/greatest, which is R-2.14.0, then
> do the biocLite dance.
>
> -steve
>
>
> On Mon, Nov 28, 2011 at 11:05 PM, Radhika Malik <radhika1990 at gmail.com> wrote:
>> Hi,
>>
>> I'm a new developer and am trying to install geoquery on R version
>> 2.13.1 on Mac OS X 10.6.8. I got the binary GEOquery_1.7.2.tgz but am
>> unable to install it
>>
>> 1. I have tried R CMD INSTALL /Users/RM/Desktop/GEOquery_1.7.2.tgz
>> When I do library('GEOquery'), this gives me the error Error: package
>> 'GEOquery' was built before R 2.10.0: please re-install it
>>
>> 2. I tried re-installing by running remove.packages('GEOquery')
>> followed by install.packages('GEOquery') but this gives me the warning
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>>  package ‘GEOquery’ is not available (for R version 2.13.1)
>>
>> and then when I try to do library('GEOquery') it again says Error:
>> package 'GEOquery' was built before R 2.10.0: please re-install it
>>
>> How can I load the library? Any help would be greatly appreciated;
>> I've been trying to just install this for several hours now..
>>
>> Thanks,
>> Radhika
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>