[Bioc-devel] xcms build failure

Steffen Neumann sneumann at ipb-halle.de
Sat Nov 19 20:20:26 CET 2011


Hi,

I am unsure why xcms fails to build (it seems it has never been built 
successfully on R-2.15-devel at all), there is a segfault 
in mt.test() on all architectures. I can't reproduce this 
here with a recent R-2.15 build. Is it mt.test(), or the data we pass?

Any ideas ?

Yours,
Steffen

*** caught segfault ***
address 0x6, cause ‘memory not mapped’

Traceback:
 1: .C("get_stat", as.double(tmp$X), as.integer(tmp$m), as.integer(tmp$n),     as.integer(tmp$classlabel), as.double(na), teststat = double(tmp$m),     as.character(options), as.integer(extra), PACKAGE = "multtest")
 2: mt.teststat(testval, testclab, ...)
 3: .local(object, ...)
 4: diffreport(xsgf, "ham4", "ham5", "example", eicmax = 4, h = 480,     w = 640)


-- 
IPB Halle                    AG Massenspektrometrie & Bioinformatik
Dr. Steffen Neumann          http://www.IPB-Halle.DE
Weinberg 3                   http://msbi.bic-gh.de
06120 Halle                  Tel. +49 (0) 345 5582 - 1470
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sneumann(at)IPB-Halle.DE     Fax. +49 (0) 345 5582 - 1409



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