[Bioc-devel] splitting one GRanges by another

Steve Lianoglou mailinglist.honeypot at gmail.com
Mon Nov 14 18:05:35 CET 2011


Quick note on this point:

On Mon, Nov 14, 2011 at 11:56 AM, Vincent Carey
<stvjc at channing.harvard.edu> wrote:

> another point --
> It seems unfortunate to me that the list elements are accessible only by
> order or by name.  It is also desirable
> to be able to get list elements or sublists by location.  Should this
> always be left to detailed programming, or would
> some general facility for selecting from GRangesList instances via
> "["("GRangesList", "GRanges", ...) be useful?

Doesn't subsetByOverlaps(GRangesList, GenomicRanges) do this already, or no?


Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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