[Bioc-devel] Illumina HumanMethylation27k and HumanMethylation450k ensembl tracks not in biomaRt?
Tim Triche, Jr.
tim.triche at gmail.com
Mon May 2 18:43:24 CEST 2011
Hi all,
Not sure whether this should go to ensembl or bioc-devel so I'm sending it
to both. Most likely, that decision will just earn me twice the scorn.
Anyways, the tracks for the hm27k and hm450k probes don't show up in either
the GFF or PDF exports (attached) nor in biomaRt (from R). I had thought it
might be useful to have BED files of the alignments against at least GRC37,
partly because I am looking at histone marks in IGV a lot lately. Plus, who
knows, perhaps an additional annotation package or two might be in the works
;-)
ensembl build 62 announcement:
http://www.ensembl.org/Homo_sapiens/Info/WhatsNew?db=core;t=ENST00000409608
On the ensembl website:
http://www.ensembl.org/Homo_sapiens/Location/View?db=core;g=ENSG00000139618;r=13:32889611-32973805#r=13:32763319-33100098
Actually, that doesn't always work either (can't for the life of me figure
out how to get a static URL that brings up only these tracks):
Sorry, the page request
"/Homo_sapiens/Component/Location/Web/ViewBottom?_rmd=2c66;db=core;g=ENSG00000139618;r=13:32847514-33015903;update_panel=1;hash_change=13:32889611-32973805;time=1304353768637.637"
failed to load.
Regardless, when I export the annotations to GFF or PDF (attached) the
Illumina probes are not reflected in the exports. D'oh.
Absence from the R 'biomaRt' interface:
> library('biomaRt')
> ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")
> listAttributes(ensembl)[grep('Illumina',listAttributes(ensembl)[,2]),2]
[1] "Illumina HumanWG 6 v1" "Illumina HumanWG 6 v2" "Illumina HumanWG 6 v3"
[4] "Illumina Human HT 12"
> sessionInfo()
R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] biomaRt_2.8.0 AnnotationDbi_1.14.1 Biobase_2.12.1
[4] Bioconductor_0.99.101 gtools_2.6.2 plyr_1.5.2
loaded via a namespace (and not attached):
[1] DBI_0.2-5 RCurl_1.5-0 RSQLite_0.9-4 tools_2.14.0 XML_3.4-0
Any thoughts? I'm assuming this is an ensembl issue since otherwise I would
expect the PDF and GFF exports to show the tracks.
I'm aware that I could BLAT the probes (and that's been done locally, as it
happens) but I do like the idea of standardization. Plus, I'm lazy :-)
Thanks for any guidance,
--tim
--
If people do not believe that mathematics is simple, it is only because they
do not realize how complicated life is.
John von Neumann<http://www-groups.dcs.st-and.ac.uk/~history/Biographies/Von_Neumann.html>
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Region: chromosome:GRCh37:13:32763319:33100098:1
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13 Ensembl Contig 32806050 32972606 . + . id=AL445212.9
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13 Ensembl Contig 33052013 33117912 . + . id=AL353665.13
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13 Ensembl Exon 32768280 32768434 . + . gene_id=CCDS41875.1; transcript_id=CCDS41875.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
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13 Ensembl Exon 33091994 33092140 . - . gene_id=CCDS45024.1; transcript_id=CCDS45024.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Exon 33095510 33095586 . - 2 gene_id=CCDS45024.1; transcript_id=CCDS45024.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Exon 33096319 33096407 . - . gene_id=CCDS45024.1; transcript_id=CCDS45024.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Exon 33091939 33092140 . - 2 gene_id=CCDS9346.1; transcript_id=CCDS9346.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Exon 33095510 33095586 . - 2 gene_id=CCDS9346.1; transcript_id=CCDS9346.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Exon 33096319 33096407 . - . gene_id=CCDS9346.1; transcript_id=CCDS9346.1; transcript_name=ccds_import; gene_type=PUTATIVE_protein_coding
13 Ensembl Species specific RefSeq/ENA cDNA 32605437 32870776 99.99 + . id=NM_023037.2
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13 Ensembl Species specific RefSeq/ENA cDNA 32823663 32823824 99.99 + . id=NM_023037.2
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13 Ensembl Species specific RefSeq/ENA cDNA 32835753 32835953 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32836451 32836612 100 + . id=CR621863.1
13 Ensembl Species specific RefSeq/ENA cDNA 32836451 32836612 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32836451 32836612 99.96 + . id=BX537670.1
13 Ensembl Species specific RefSeq/ENA cDNA 32836451 32836612 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32838805 32838876 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32838805 32869779 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32839587 32839753 100 + . id=CR621863.1
13 Ensembl Species specific RefSeq/ENA cDNA 32839587 32839753 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32839587 32839753 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32839587 32839753 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32839587 32840879 99.96 + . id=BX537670.1
13 Ensembl Species specific RefSeq/ENA cDNA 32841307 32841496 100 + . id=CR621863.1
13 Ensembl Species specific RefSeq/ENA cDNA 32841307 32841496 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32841307 32841496 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32841307 32841496 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32848979 32849128 100 + . id=CR621863.1
13 Ensembl Species specific RefSeq/ENA cDNA 32848979 32849128 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32848979 32849128 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32848979 32849128 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32849275 32852978 99.96 + . id=BX537670.1
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13 Ensembl Species specific RefSeq/ENA cDNA 32850601 32850699 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32850601 32850699 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32852602 32852685 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32852602 32852685 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32852602 32852685 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32852602 32852976 100 + . id=CR621863.1
13 Ensembl Species specific RefSeq/ENA cDNA 32862004 32862021 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32863770 32863880 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32863770 32863880 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32863770 32863880 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32868505 32868707 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32868505 32868707 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32868505 32868707 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32869339 32869779 100 + . id=AK298021.1
13 Ensembl Species specific RefSeq/ENA cDNA 32869339 32870750 99.97 + . id=AK091422.1
13 Ensembl Species specific RefSeq/ENA cDNA 32869339 32870776 99.99 + . id=NM_023037.2
13 Ensembl Species specific RefSeq/ENA cDNA 32872394 32873256 100 + . id=BC036296.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32878159 100 - . id=BC146965.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32878159 100 - . id=BC146956.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32878159 100 - . id=NM_001136571.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32886089 100 - . id=BC146956.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32886091 100 - . id=BC146965.1
13 Ensembl Species specific RefSeq/ENA cDNA 32877908 32886091 100 - . id=NM_001136571.1
13 Ensembl Species specific RefSeq/ENA cDNA 32882823 32882897 100 - . id=BC146965.1
13 Ensembl Species specific RefSeq/ENA cDNA 32882823 32882897 100 - . id=BC146956.1
13 Ensembl Species specific RefSeq/ENA cDNA 32882823 32882897 100 - . id=NM_001136571.1
13 Ensembl Species specific RefSeq/ENA cDNA 32883872 32883903 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 32883872 33096412 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 32884776 32884868 100 - . id=BC146965.1
13 Ensembl Species specific RefSeq/ENA cDNA 32884776 32884868 100 - . id=BC146956.1
13 Ensembl Species specific RefSeq/ENA cDNA 32884776 32884868 100 - . id=NM_001136571.1
13 Ensembl Species specific RefSeq/ENA cDNA 32885409 32886089 100 - . id=BC146956.1
13 Ensembl Species specific RefSeq/ENA cDNA 32885409 32886091 100 - . id=BC146965.1
13 Ensembl Species specific RefSeq/ENA cDNA 32885409 32886091 100 - . id=NM_001136571.1
13 Ensembl Species specific RefSeq/ENA cDNA 32889617 32889804 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32889617 32973809 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32889640 32889804 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32889640 32907420 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32889642 32889804 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32889642 32907420 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32890559 32890660 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32890559 32890660 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32890559 32890664 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32890598 32890664 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32890598 32936796 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32893214 32893462 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32893214 32893462 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32893214 32893462 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32893214 32893462 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32899213 32899321 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32899213 32899321 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32899213 32899321 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32899213 32899321 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900238 32900287 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32900238 32900287 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900238 32900287 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900238 32900287 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900379 32900419 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32900379 32900419 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900379 32900419 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900379 32900419 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900636 32900750 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32900636 32900750 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900636 32900750 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32900636 32900750 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32903580 32903629 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32903580 32903629 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32903580 32903629 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32903580 32903629 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32905056 32905167 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32905056 32905167 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32905056 32905167 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32905056 32905167 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32906409 32907420 100 + . id=BC047568.1
13 Ensembl Species specific RefSeq/ENA cDNA 32906409 32907420 99.85 + . id=BC026160.1
13 Ensembl Species specific RefSeq/ENA cDNA 32906409 32907524 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32906409 32907524 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32910402 32915333 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32910402 32915333 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32918695 32918790 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32918695 32918790 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32920964 32921033 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32920964 32921033 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32928998 32929425 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32928998 32929425 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32930565 32930746 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32930565 32930746 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32931879 32932066 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32931879 32932066 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32936652 32936796 100 + . id=DQ897648.1
13 Ensembl Species specific RefSeq/ENA cDNA 32936660 32936830 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32937316 32937670 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32944539 32944694 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32945093 32945237 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32950807 32950928 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32953454 32953652 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32953887 32954050 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32954144 32954282 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32968826 32969070 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32971035 32971181 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32972299 32973809 100 + . id=NM_000059.3
13 Ensembl Species specific RefSeq/ENA cDNA 32974861 32977337 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 32974861 32977337 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 32974861 33002315 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 32974861 33002315 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 32975806 32977337 100 - . id=BX648509.1
13 Ensembl Species specific RefSeq/ENA cDNA 32975806 32985113 100 - . id=BX648509.1
13 Ensembl Species specific RefSeq/ENA cDNA 32975876 32977337 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 32975876 33002261 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 32976193 32977337 100 - . id=BC125050.1
13 Ensembl Species specific RefSeq/ENA cDNA 32976193 32981853 100 - . id=BC125050.1
13 Ensembl Species specific RefSeq/ENA cDNA 32978340 32978408 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 32978340 32978408 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 32978458 32978534 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 32978458 32978534 100 - . id=BX648509.1
13 Ensembl Species specific RefSeq/ENA cDNA 32978458 32978534 100 - . id=BC125050.1
13 Ensembl Species specific RefSeq/ENA cDNA 32980624 32981909 100 - . id=BC068049.1
13 Ensembl Species specific RefSeq/ENA cDNA 32980624 33002311 100 - . id=BC068049.1
13 Ensembl Species specific RefSeq/ENA cDNA 32980630 32981909 99.57 - . id=AF113009.1
13 Ensembl Species specific RefSeq/ENA cDNA 32980630 33002143 99.57 - . id=AF113009.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981387 32981475 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 32981387 32981475 100 - . id=BX648509.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981387 32981475 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981387 32981475 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 32981387 32981475 100 - . id=BC125050.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981782 32981853 100 - . id=BC125050.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981782 32981909 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 32981782 32981909 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 32981782 32981909 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 32981782 32985113 100 - . id=BX648509.1
13 Ensembl Species specific RefSeq/ENA cDNA 32999061 33001480 100 + . id=BC011650.2
13 Ensembl Species specific RefSeq/ENA cDNA 32999061 33002299 100 + . id=BC011650.2
13 Ensembl Species specific RefSeq/ENA cDNA 33002041 33002143 99.57 - . id=AF113009.1
13 Ensembl Species specific RefSeq/ENA cDNA 33002041 33002261 100 - . id=BC022188.2
13 Ensembl Species specific RefSeq/ENA cDNA 33002041 33002311 100 - . id=BC068049.1
13 Ensembl Species specific RefSeq/ENA cDNA 33002041 33002315 100 - . id=NM_052818.2
13 Ensembl Species specific RefSeq/ENA cDNA 33002041 33002315 100 - . id=NM_001079691.1
13 Ensembl Species specific RefSeq/ENA cDNA 33002157 33002299 100 + . id=BC011650.2
13 Ensembl Species specific RefSeq/ENA cDNA 33006919 33007109 100 - . id=CR596312.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006919 33016981 100 - . id=CR596312.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006924 33007109 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006924 33007109 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006924 33054775 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006924 33112929 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006929 33007109 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006929 33054775 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33006930 33007109 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33006930 33112936 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33006962 33007109 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33007028 33007109 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33007028 33101642 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 100 - . id=CR596312.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33010498 33010542 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 100 - . id=CR596312.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33012789 33012874 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33016685 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33016981 100 - . id=CR596312.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33018263 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33018263 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33018263 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33018263 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33016525 33018263 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33020496 33020617 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33052024 33052185 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33054727 33054775 97.93 - . id=AK093514.1
13 Ensembl Species specific RefSeq/ENA cDNA 33054727 33054775 99.15 - . id=AK310280.1
13 Ensembl Species specific RefSeq/ENA cDNA 33078653 33083532 100 + . id=NR_026928.1
13 Ensembl Species specific RefSeq/ENA cDNA 33084430 33085024 100 + . id=BC047329.1
13 Ensembl Species specific RefSeq/ENA cDNA 33084655 33087614 100 + . id=AK094967.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091031 33092140 100 - . id=NM_014887.2
13 Ensembl Species specific RefSeq/ENA cDNA 33091031 33092140 100 - . id=AK123084.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091031 33097093 100 - . id=AK123084.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091031 33112932 100 - . id=NM_014887.2
13 Ensembl Species specific RefSeq/ENA cDNA 33091755 33092140 92.28 - . id=AL832581.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091755 33099718 92.28 - . id=AL832581.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091759 33092140 100 - . id=BC010643.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091759 33112915 100 - . id=BC010643.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091939 33092140 100 - . id=AK312924.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091939 33092140 100 - . id=AF530063.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091939 33111164 100 - . id=AF530063.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091939 33112929 100 - . id=AK312924.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091940 33092140 99.94 - . id=BT007172.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091940 33111164 99.94 - . id=BT007172.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091994 33092140 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091994 33092140 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33091994 33092140 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33091994 33092140 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=NM_014887.2
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=AK312924.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=BC010643.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 99.94 - . id=BT007172.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33095586 100 - . id=AF530063.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33096412 94.71 - . id=AK125067.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33097093 100 - . id=AK123084.1
13 Ensembl Species specific RefSeq/ENA cDNA 33095510 33099718 92.28 - . id=AL832581.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=NM_014887.2
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=AK312924.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=NM_033111.3
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 97.76 - . id=BC131631.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=BC010643.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 99.94 - . id=BT007172.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=AK298546.1
13 Ensembl Species specific RefSeq/ENA cDNA 33096319 33096407 100 - . id=AF530063.1
13 Ensembl Reg. Feats 32769936 32770153 . . . id=ENSR00000513964
13 Ensembl Reg. Feats 32779575 32780101 . . . id=ENSR00000513965
13 Ensembl Reg. Feats 32785858 32786522 . . . id=ENSR00000513966
13 Ensembl Reg. Feats 32786559 32786989 . . . id=ENSR00001036086
13 Ensembl Reg. Feats 32799508 32800162 . . . id=ENSR00001036087
13 Ensembl Reg. Feats 32802461 32802823 . . . id=ENSR00000513969
13 Ensembl Reg. Feats 32820264 32821072 . . . id=ENSR00000513970
13 Ensembl Reg. Feats 32822942 32823165 . . . id=ENSR00000513971
13 Ensembl Reg. Feats 32827855 32828514 . . . id=ENSR00000513972
13 Ensembl Reg. Feats 32828798 32829071 . . . id=ENSR00000513973
13 Ensembl Reg. Feats 32829736 32830356 . . . id=ENSR00000513974
13 Ensembl Reg. Feats 32833277 32833683 . . . id=ENSR00000666481
13 Ensembl Reg. Feats 32834234 32834511 . . . id=ENSR00000513976
13 Ensembl Reg. Feats 32835062 32836332 . . . id=ENSR00000513977
13 Ensembl Reg. Feats 32836881 32837165 . . . id=ENSR00000513978
13 Ensembl Reg. Feats 32838282 32839051 . . . id=ENSR00000513979
13 Ensembl Reg. Feats 32840323 32840570 . . . id=ENSR00000513980
13 Ensembl Reg. Feats 32841925 32842462 . . . id=ENSR00000054734
13 Ensembl Reg. Feats 32846176 32846621 . . . id=ENSR00000513981
13 Ensembl Reg. Feats 32852604 32852975 . . . id=ENSR00001036088
13 Ensembl Reg. Feats 32858715 32860099 . . . id=ENSR00000513983
13 Ensembl Reg. Feats 32866596 32866756 . . . id=ENSR00000513984
13 Ensembl Reg. Feats 32883706 32883997 . . . id=ENSR00001035821
13 Ensembl Reg. Feats 32884132 32884676 . . . id=ENSR00000054735
13 Ensembl Reg. Feats 32888980 32890531 . . . id=ENSR00000054736
13 Ensembl Reg. Feats 32892246 32892521 . . . id=ENSR00001036089
13 Ensembl Reg. Feats 32898037 32898499 . . . id=ENSR00000513985
13 Ensembl Reg. Feats 32904553 32904986 . . . id=ENSR00000513986
13 Ensembl Reg. Feats 32924954 32925349 . . . id=ENSR00000666482
13 Ensembl Reg. Feats 32928254 32928597 . . . id=ENSR00001036090
13 Ensembl Reg. Feats 32939117 32939274 . . . id=ENSR00000274472
13 Ensembl Reg. Feats 32942009 32942174 . . . id=ENSR00000274473
13 Ensembl Reg. Feats 32955661 32956112 . . . id=ENSR00000666483
13 Ensembl Reg. Feats 32958861 32959183 . . . id=ENSR00001036091
13 Ensembl Reg. Feats 32965419 32965701 . . . id=ENSR00000513988
13 Ensembl Reg. Feats 32982044 32982390 . . . id=ENSR00000666484
13 Ensembl Reg. Feats 32983675 32984664 . . . id=ENSR00000513989
13 Ensembl Reg. Feats 32989075 32989614 . . . id=ENSR00000513990
13 Ensembl Reg. Feats 32993420 32993605 . . . id=ENSR00000513991
13 Ensembl Reg. Feats 32997796 32998049 . . . id=ENSR00000274477
13 Ensembl Reg. Feats 33000116 33003204 . . . id=ENSR00000513992
13 Ensembl Reg. Feats 33006965 33007324 . . . id=ENSR00000513993
13 Ensembl Reg. Feats 33017221 33017607 . . . id=ENSR00000054742
13 Ensembl Reg. Feats 33018038 33018364 . . . id=ENSR00001036092
13 Ensembl Reg. Feats 33020411 33020775 . . . id=ENSR00000513994
13 Ensembl Reg. Feats 33027201 33027670 . . . id=ENSR00000513995
13 Ensembl Reg. Feats 33029394 33029892 . . . id=ENSR00000513996
13 Ensembl Reg. Feats 33041504 33041938 . . . id=ENSR00000513997
13 Ensembl Reg. Feats 33042930 33043278 . . . id=ENSR00000274479
13 Ensembl Reg. Feats 33045539 33046125 . . . id=ENSR00000274480
13 Ensembl Reg. Feats 33046393 33046602 . . . id=ENSR00000513998
13 Ensembl Reg. Feats 33066281 33066437 . . . id=ENSR00000274481
13 Ensembl Reg. Feats 33070739 33071190 . . . id=ENSR00000274482
13 Ensembl Reg. Feats 33073691 33074161 . . . id=ENSR00000513999
13 Ensembl Reg. Feats 33077939 33078171 . . . id=ENSR00000514000
13 Ensembl Reg. Feats 33078373 33078743 . . . id=ENSR00000514001
13 Ensembl Chromosome band 32200001 34000000 . . . name=q13.1
99
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