Hello,
I'm having some troubles loading GenomicFeatures. I'm on a Windows 7 64 bit PC. This is the output I see, in a new session of R.
> library(GenomicFeatures)
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
cbind, eval, intersect, Map, mapply, order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: GenomicRanges
Error : class "Sequence" is not exported by 'namespace:IRanges'
Error: package/namespace load failed for 'GenomicFeatures'
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
[5] LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] GenomicRanges_1.4.6 IRanges_1.10.4
loaded via a namespace (and not attached):
[1] biomaRt_2.6.0 Biostrings_2.20.1 BSgenome_1.20.0 DBI_0.2-5 RCurl_1.5-0.1 RSQLite_0.9-4 XML_3.2-0.2
> GRanges()
GRanges with 0 ranges and 0 elementMetadata values
seqnames ranges strand |
seqlengths
> IRanges()
IRanges of length 0
Strangely, GenomicRanges seems to have been loaded, although the loading gave an error message.
In another new R session, I can load GenomicRanges just fine.
> library(GenomicRanges)
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
cbind, eval, intersect, Map, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
[5] LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] GenomicRanges_1.4.6 IRanges_1.10.4
Does anyone else have the same problem ?
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia