[Bioc-devel] org.Mm.eg.db 2.5.0 appears broken

[Dan Tenenbaum]

On Tue, Aug 30, 2011 at 6:29 PM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> On Tue, Aug 30, 2011 at 5:56 PM, Paul Shannon
> <pshannon at systemsbiology.org> wrote:
>> Here's what I see.  Not sure what it means, but it doesn't seem right!
>>
>>  - Paul
>>
>>> R-devel CMD install org.Mm.eg.db_2.5.0.zip
>> Error in rawToChar(block[seq_len(ns)]) :
>>  embedded nul in string: 'PK\003\004\n\0\0\0\0\0\xe7\x80\003?\0\0\0\0\0\0\0\0\0\0\0\0\r\0\0\0org.Mm.eg.db/PK\003\004\024\0\002\0\b\0\xe4\x80\003?\005\x8f\\
>> xfe2\x99\001\0\0\x8b\002\0\0\030\0\0\0org.Mm.eg.db/DESCRIPTION\x85R\xdb'
>
>
> I just tried installing org.Mm.eg.db_2.5.0 under R-devel with
> biocLite() and it worked fine, and library(org.Mm.eg.db_2.5.0)
> produced no errors either.
>

A clarification: neither:
source("http://bioconductor.org/biocLite.R")
biocLite("org.Mm.eg.db")
 nor
library(org.Mm.eg.db)

produced errors.

Dan

> I suggest you try biocLite(). If that doesn't work, try R CMD INSTALL
> instead of R CMD install (R is picky about case here) and if that
> doesn't work, send your sessionInfo().
>
> Dan
>
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>