[Bioc-devel] BUG/TYPO: gcrma::bg.adjust.affinities <- function(..., k=k, ...)

[Henrik Bengtsson]

[maintainer cc:ed]

Hi,

I looks like there is a cut'n'paste bug in gcrma::bg.adjust.affinities():

> library("gcrma");
> args(gcrma::bg.adjust.affinities);
function (pms, ncs, apm, anc, index.affinities, k = k, fast = FALSE,
    nomm = FALSE)

Note how the default value for argument 'k' is k.  Looks like a
mistake to me.  Most likely it is not a serious one.

> sessionInfo()
R version 2.12.0 alpha (2010-09-27 r53048)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] gcrma_2.21.1  affy_1.27.2   Biobase_2.9.1

loaded via a namespace (and not attached):
[1] affyio_1.17.4         Biostrings_2.17.47    IRanges_1.7.34
[4] preprocessCore_1.11.0 splines_2.12.0        tools_2.12.0

/Henrik