[Bioc-devel] Biobase from BioC 2.7 doesn't load in Mac OSX 10.6

[Vincent Carey]

with xcode 3.2.3, i did biocLite("Biobase", type="source") and got a
loadable install of Biobase.  build system managers will have to
comment on the distributed binaries.

> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
[1] Biobase_2.10.0

loaded via a namespace (and not attached):
[1] tools_2.12.0


On Tue, Oct 19, 2010 at 7:17 AM, Vincent Carey
<stvjc at channing.harvard.edu> wrote:
> confirmed on my macosx 10.6.4 mac -- will start checking.
>
> On Tue, Oct 19, 2010 at 2:31 AM, Robert Castelo <robert.castelo at upf.edu> wrote:
>> hi,
>>
>> i've just tried a new fresh installation of R 2.12 in my Mac OSX 10.6 laptop
>> and found the following problem:
>>
>> source("http://www.bioconductor.org/biocLite.R")
>> biocLite()
>>
>> [... installs everything apparently without problems ...]
>>
>>
>> library(Biobase)
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Biobase/libs/x86_64/Biobase.so':
>>
>> dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Biobase/libs/x86_64/Biobase.so,
>> 6): Library not loaded:
>> /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib
>>  Referenced from:
>> /Library/Frameworks/R.framework/Versions/2.12/Resources/library/Biobase/libs/x86_64/Biobase.so
>>  Reason: image not found
>> Error: package/namespace load failed for 'Biobase'
>>
>> sessionInfo()
>> R version 2.12.0 (2010-10-15)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> cheers,
>> robert.
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>