[Bioc-devel] Gene Annotation and Gene Ontology

[Gilbert Feng]

Hi, Zhiyou

We have developed a bioconductor package, GeneAnswers, which also uses
hypergeometric test to run enrichment test for a group of genes. The
background algorithm is similar to GoStats/Category, but GeneAnswers can
provide keywords test and extra graphics representation for analysis.

Let me know if you have any question about it.

Best



On 5/12/10 8:16 AM, "Dr Z. Du" <zd224 at cam.ac.uk> wrote:

> Hi,
> 
> I finished analysis of the differential expression of genes using Limma
> package, and got the list of differentialy expressed genes. I tried to make
> gene annotation (ath1121501db)and Gene ontology (gostats) for these
> differential expressed genes. But, I failed. Does anybody have any
> experience about is, and share it with me? I need to say the microarray I
> used is Affy Arabidopsis ATH1. I will appreciate if you can supply any
> information.
> 
> Regards,
> 
> Zhiyou
> 
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-----------------------------------------------
Gang (Gilbert) Feng, PhD
Biomedical Informatics Center
Robert H. Lurie Comprehensive Cancer Center
Northwestern University
750 N. Lake Shore Drive, 11th Floor(11-175e)
Chicago, IL  60611
Phone:312-503-2358
Email g-feng (at) northwestern.edu