[Bioc-devel] problem with binary packages in windows with R 2.10 alpha

Martin Morgan mtmorgan at fhcrc.org
Sat Oct 10 18:42:41 CEST 2009

Hi Jan --

J.Oosting at lumc.nl wrote:
> For a number of packages of bioconductor I get the following error message when I try to load them
> Error: package 'tilingArray' claims to be built under R version 2.10.0 but is missing some help files and needs to be re-installed
> This happened today after installing the latest R 2.10alpha, and using biocLite() to install bioconductor packages.
> It seems as if some of the binary packages on the bioconductor repository have been built with a R 2.10 version that did not include the newest help file changes. 
> The quantsmooth package had the same problem, but when I build it locally the message is does not appear anymore

yes, the system only loosely tracks the development version of R, and
we're a little out of sync. The plan is to update the devel build
systems early next week. Martin

> Jan Oosting
>> sessionInfo()
> R version 2.10.0 alpha (2009-10-08 r49995) 
> i386-pc-mingw32 
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C                           LC_TIME=English_United States.1252    
> attached base packages:
>  [1] grid      grDevices datasets  splines   graphics  stats     tcltk     utils     methods   base     
> other attached packages:
>  [1] limma_3.0.0        quantsmooth_1.11.1 lodplot_1.1        quantreg_4.38      SparseM_0.80       Biobase_2.5.8      RGtk2_2.12.15     
>  [8] TinnR_1.0.3        R2HTML_1.59-1      Hmisc_3.7-0        survival_2.35-7   
> loaded via a namespace (and not attached):
> [1] cluster_1.12.1  lattice_0.17-26 tools_2.10.0   
> 	[[alternative HTML version deleted]]
> _______________________________________________
> Bioc-devel at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793

More information about the Bioc-devel mailing list