[Bioc-devel] Importing get() method from GO.db

[Hervé Pagès]

Hervé Pagès wrote:
[...]
> 
>   > showMethods("get")
>   Function: get (package base)
>   x="ANY", pos="AnnDbBimap", envir="missing"
>   x="ANY", pos="ANY", envir="AnnDbBimap"
>   x="ANY", pos="ANY", envir="ANY"
>   x="ANY", pos="GOTermsAnnDbBimap", envir="ANY"
>       (inherited from: x="ANY", pos="ANY", envir="ANY")
>   x="character", pos="GOTermsAnnDbBimap", envir="missing"
>       (inherited from: x="ANY", pos="AnnDbBimap", envir="missing")
>   x="character", pos="missing", envir="environment"
>       (inherited from: x="ANY", pos="ANY", envir="ANY")

Oops, this is more appropriate here:

   > showMethods(AnnotationDbi::get)
   Function: get (package base)
   x="ANY", pos="AnnDbBimap", envir="missing"
   x="ANY", pos="ANY", envir="AnnDbBimap"
   x="ANY", pos="ANY", envir="ANY"
   x="ANY", pos="GOTermsAnnDbBimap", envir="ANY"
       (inherited from: x="ANY", pos="ANY", envir="ANY")
   x="character", pos="GOTermsAnnDbBimap", envir="missing"
       (inherited from: x="ANY", pos="AnnDbBimap", envir="missing")
   x="character", pos="missing", envir="environment"
       (inherited from: x="ANY", pos="ANY", envir="ANY")

just to make sure we are passing the generic we want to list the methods
for...

H.

> 
> Cheers,
> 
> H.
> 
>  > sessionInfo()
> R version 2.10.0 Under development (unstable) (2009-06-15 r48781)
> x86_64-unknown-linux-gnu
> 
> locale:
>  [1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_CA.UTF-8
>  [7] LC_PAPER=en_CA.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] GO.db_2.3.0         RSQLite_0.7-1       DBI_0.2-4
> [4] AnnotationDbi_1.7.7 Biobase_2.5.4
> 
> 
> 
>> TIA,
>>
>> Jim
>>
>>
>>
>> James W. MacDonald, M.S.
>> Biostatistician
>> Douglas Lab
>> 5912 Buhl
>> 1241 E. Catherine St.
>> Ann Arbor MI 48109-5618
>> 734-615-7826
>> **********************************************************
>> Electronic Mail is not secure, may not be read every day, and should 
>> not be used for urgent or sensitive issues
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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