[Bioc-devel] Biobase/IRanges annotation maksing

[Laurent Gatto]

Hello,

I can reproduce the behaviour on my side. 
Below is the output for today's R-devel version (2009-02-18 r47956). The same 
was observed with R-devel (2009-02-12 r47911).

Laurent


> library("IRanges")

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 

> annotation
standardGeneric for "annotation" defined from package "IRanges"

function (x, ...) 
standardGeneric("annotation")
<environment: 0x8d17d7c>
Methods may be defined for arguments: x
Use  showMethods("annotation")  for currently available ones.
> showMethods("annotation")
Function: annotation (package IRanges)
x="AnnotatedList"

> Biobase:::annotation
standardGeneric for "annotation" defined from package "Biobase"

function (object) 
standardGeneric("annotation")
<environment: 0x8a8eba0>
Methods may be defined for arguments: object
Use  showMethods("annotation")  for currently available ones.
> showMethods("annotation")

Function "annotation":
 <not a generic function>
> sessionInfo()
R version 2.9.0 Under development (unstable) (2009-02-18 r47956) 
i686-pc-linux-gnu 

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] IRanges_1.1.38

loaded via a namespace (and not attached):
[1] Biobase_2.3.10