[Bioc-devel] BSgenome error

Julie Zhu julie.zhu at umassmed.edu
Sat Dec 12 21:31:28 CET 2009

Hi Herve,

I encountered problem loading Bsgenome. Please let me know how to fix it.
The ChIPpeakAnno package I am working on relies on Bsgenome. Thank you very
much for your help!

Best regards,


> library(BSgenome)
Error: package 'IRanges' 1.3.49 is loaded, but >= 1.3.79 is required by
In addition: Warning message:
package 'BSgenome' claims to be built under R version 2.10.0 but is missing
some help files and needs to be re-installed

> sessionInfo()
R version 2.10.0 (2009-10-26)

[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
 [1] Biostrings_2.13.30            IRanges_1.3.49
multtest_2.1.2                biomaRt_2.1.0
 [5] mogene10stv1.r3.xdacdf_1.24.0 makecdfenv_1.24.0
affyio_1.14.0                 mogene10stv1.r3cdf_2.5.0
 [9] annaffy_1.17.1                KEGG.db_2.3.5                 GO.db_2.3.5
[13] DBI_0.2-4                     AnnotationDbi_1.8.1
affxparser_1.18.0             affy_1.23.5
[17] Biobase_2.5.5 

loaded via a namespace (and not attached):
[1] MASS_7.3-3           preprocessCore_1.8.0 RCurl_0.98-1
splines_2.10.0       survival_2.35-7      tools_2.10.0
[7] XML_2.3-0      

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