[Bioc-devel] annotate missing from devel

[James W. MacDonald]

Hi Herve,

Herve Pages wrote:
> Hi Kasper,
> 
> Kasper Daniel Hansen wrote:
>> The checks seems fine but I cannot obtain it with biocLite under 2.8.0
> 
> The "orange" builds (i.e. the builds for R-2.7/BioC-2.2) look fine for 
> annotate:
> 
>   
> http://bioconductor.org/checkResults/2.2/bioc-LATEST/annotate/lamb1-buildsrc.html 
> 
> 
> but not the "aquarium" builds (i.e. the builds for R-2.8/BioC-2.3):
> 
>   
> http://bioconductor.org/checkResults/2.3/bioc-LATEST/annotate/wilson1-buildsrc.html 
> 
> 
> Therefore annotate will not be pushed to the BioC 2.3 public repo until 
> someone
> fixes its vignette.

Unfortunately that vignette is unfixable - it is based on the old 
Homologene/env packages, so will need to be almost completely rewritten 
to use the new InParanoid/SQLite packages.

I should be able to replace it with something reasonable either this 
week or the next. In the meantime I will just rename it so it won't 
interfere with the build.

Best,

Jim


> 
> Cheers,
> H.
> 
> PS: The general page for all our builds is:
> 
>   http://bioconductor.org/checkResults/
> 
> 
>>
>> Kasper
>>
>> _______________________________________________
>> Bioc-devel at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
> _______________________________________________
> Bioc-devel at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623