[Bioc-devel] XML package unavailable? or needed by annotate and graph?

[Keith Satterley]

When I do

biocLite(dependencies=TRUE)

I get a warning message saying "
dependency ‘XML’ is not available

If I try to install XML using:

biocLite("XML")

I get:
Running biocinstall version 2.2.6 with R version 2.7.0 (under development)
Your version of R requires version 2.2 of Bioconductor.
Warning message:
package ‘XML’ is not available

On checking installed packages DESCRIPTION files, I find the lines:

annotate:
DESCRIPTION:        rae230aprobe, tkWidgets, XML (>= 0.92-2), hsahomology,
graph:
DESCRIPTION:Suggests: SparseM (>= 0.36), XML, RBGL

Is XML available anywhere or do the annotate package and graph package need 
their DESCRIPTION files modified?

 > sessionInfo()
R version 2.7.0 beta (2008-04-12 r45280)
i386-pc-mingw32

locale:
LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

loaded via a namespace (and not attached):
[1] tools_2.7.0

cheers,

Keith

========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia