[Bioc-devel] Importing generic functions from other pkgs and defining methods on them?
Benilton Carvalho
bcarvalh at jhsph.edu
Fri Mar 9 11:35:33 CET 2007
Sorry for not providing a reproducible example.
After a couple of days, I finally noticed that generic functions are
not defined for ncol/nrow and that was what the problem for "image"
to work for me (as I also define methods for both and naively assumed
they were had generics).
b
On Mar 9, 2007, at 1:45 AM, Seth Falcon wrote:
> Benilton Carvalho <bcarvalh at jhsph.edu> writes:
>
>> Since we're on this topic... that reminds me a problem I've been
>> trying to solve in the last days.
>>
>> I have an "image" method (S4), which doesn't work when I build/
>> install the package... But it does work if I source the file that
>> defines the method (after loading the just-built package).
>>
>> Any chance this would be somewhat similar/related to what Wolfgang
>> described?
>
> Yes.
>
>
>
> But without a bit more detail that's all I could say.
>
> So in oligo there is an image method, but it seems to work (dispatch)
> fine for me after installing oligo. For example:
>
> library(oligo)
>> ff = new("FeatureSet")
>> image(ff)
> Error in if (tolower(manufacturer(x)) == "affymetrix") { :
> argument is of length zero
>>
>
>
> + seth
>
> --
> Seth Falcon | Computational Biology | Fred Hutchinson Cancer
> Research Center
> http://bioconductor.org
>
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