[Bioc-devel] unexpected interaction of "exprSet" and "DBI" package
Wolfgang Huber
huber at ebi.ac.uk
Sun Apr 15 01:12:17 CEST 2007
Hi
has anybody seen the following phenomenon before or have an idea whether
it is to be considered a bug in either methods, Biobase or DBI?
library("Biobase")
new("exprSet", description = new("MIAME"))
library("DBI")
Error in .mergeMethodsTable(generic, mtable, get(tname, envir = env), :
Invalid object in meta table of methods for "coerce", label
"list#Versions", had class "function"
Thanks to Jelle Goeman, who pointed out a version of this problem. My
attempts to more closely locate the origin have so far not been
successul. The error does not occur when 'description = new("MIAME")' is
omitted.
Best wishes
Wolfgang
------------------------------------------------------------------
Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber
--------------------------------------------
> sessionInfo()
R version 2.5.0 beta (2007-04-14 r41163)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "tools" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "methods" "base"
other attached packages:
Biobase fortunes
"1.13.49" "1.3-2"
> packageDescription("DBI")
Package: DBI
Version: 0.2-1
Title: R Database Interface
Author: R Special Interest Group on Databases (R-SIG-DB)
Maintainer: David A. James <daj025 at gmail.com>
Depends: R (>= 2.3.0), methods
Imports: methods
Description: A database interface (DBI) definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
SaveImage: yes
License: GPL (version 2 or later)
Collate: setup.R DBI.R Util.R zzz.R
Packaged: Tue Mar 27 15:36:48 2007; sfalcon
Built: R 2.5.0; ; 2007-04-05 09:35:39; unix
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