[Bioc-devel] .First.lib error in beadarray
Mark Dunning
md392 at cam.ac.uk
Fri Sep 29 12:44:07 CEST 2006
Hi all,
My package does not seem to like Solaris at all :( Now I am getting the
following build ERROR
"Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so':
ld.so.1: R: fatal: relocation error: file
/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so:
symbol log2: referenced symbol not found Error: package/namespace load
failed for 'beadarray'"
Can anyone advise on this please? Is it another problem with the version of
R on Solaris?
Thanks in advance,
Mark
On Sep 15 2006, Seth Falcon wrote:
>Hi Mark,
>
>Sorry for the delay in response.
>
>Mark Dunning <md392 at cam.ac.uk> writes:
>
>> Hi all,
>>
>> Apologies if this is a basic question, but I am seeing the following
>> error in the 1.9 Check report for beadarray on Solaris
>>
>> Error: .First.lib failed for 'beadarray'
>> Call sequence:
>> 2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>> domain = NA)
>> 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose
>> = FALSE)
>> Execution halted
>> See section 'Generic functions and methods' of the 'Writing R
>> Extensions'
>> manual.
>>
>> Full details are here:
>> http://bioconductor.org/checkResults/1.9/churchill-beadarray-
>> checksrc.html
>>
>> I'm quite new to development, so unfortunately this message means
>> little to me and it's quite puzzling that it appears on Solaris and
>> no other machines? Would someone be able to give some pointers how to
>> go about fixing the error?
>
>The Solaris machine does not yet have up-to-date version of R alpha.
>Let's ignore this until it does and go from there.
>
>But thank you for keeping an eye on the check report of your package
>and posting questions.
>
>
>+ seth
>
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>
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