[Bioc-devel] .First.lib error in beadarray

[Mark Dunning]

Hi all,

My package does not seem to like Solaris at all :( Now I am getting the 
following build ERROR

"Error in dyn.load(x, as.logical(local), as.logical(now)) : 
         unable to load shared library 
'/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so':
  ld.so.1: R: fatal: relocation error: file 
/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so: 
symbol log2: referenced symbol not found Error: package/namespace load 
failed for 'beadarray'"

Can anyone advise on this please? Is it another problem with the version of 
R on Solaris?

Thanks in advance,

Mark

On Sep 15 2006, Seth Falcon wrote:

>Hi Mark,
>
>Sorry for the delay in response.
>
>Mark Dunning <md392 at cam.ac.uk> writes:
>
>> Hi all,
>>
>> Apologies if this is a basic question, but I am seeing the following  
>> error in the 1.9 Check  report for beadarray on Solaris
>>
>> Error: .First.lib failed for 'beadarray'
>> Call sequence:
>> 2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
>>         domain = NA)
>> 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose  
>> = FALSE)
>> Execution halted
>> See section 'Generic functions and methods' of the 'Writing R  
>> Extensions'
>> manual.
>>
>> Full details are here:
>> http://bioconductor.org/checkResults/1.9/churchill-beadarray- 
>> checksrc.html
>>
>> I'm quite new to development, so unfortunately this message means  
>> little to me and it's quite puzzling that it appears on Solaris and  
>> no other machines? Would someone be able to give some pointers how to  
>> go about fixing the error?
>
>The Solaris machine does not yet have up-to-date version of R alpha.
>Let's ignore this until it does and go from there.
>
>But thank you for keeping an eye on the check report of your package
>and posting questions.  
>
>
>+ seth
>
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