[Bioc-devel] some data packages available for testing

Nianhua Li nli at fhcrc.org
Fri Sep 8 20:27:51 CEST 2006


Some data packages are available at
http://www.bioconductor.org/packages/1.9/data/annotation/ for testing.
Version number is 1.13.0. Both source and windows binaries are there.
They were built by using R 2.4.0 alpha, AnnBuilder 1.11.11 and GO
1.13.0. Annotation data was downloaded from public databases on Aug 25
and from chip manufactures on Aug 29:

ag           ggahomology  hgug4110b    mgu74b       ncrhomology  rtu34
agahomology  gmahomology  hgug4112a    mgu74bv2     omyhomology  scehomology
ath1121501   GO           hsahomology  mgu74c       osahomology  spohomology
athhomology  hcg110       hu35ksuba    mgu74cv2     pfahomology  sschomology
btahomology  hgfocus      hu35ksubb    mmuhomology  PFAM         taehomology
canine2      hgu133a      hu35ksubc    moe430a      ptrhomology  u133x3p
celegans     hgu133a2     hu35ksubd    moe430b      rae230a      vvihomology
celhomology  hgu133b      hu6800       mouse4302    rae230b     
cfahomology  hgu133plus2  humanCHRLOC  mouse430a2   rat2302      xlahomology
cinhomology  hgu95a       hvuhomology  mouseCHRLOC  ratCHRLOC    xtrhomology
dmehomology  hgu95av2     KEGG         mu11ksuba    rgu34a       YEAST
drehomology  hgu95b       klahomology  mu11ksubb    rgu34b       yeast2
drosgenome1  hgu95c       mgrhomology  mu19ksuba    rgu34c       ygs98
drosophila2  hgu95d       mgu74a       mu19ksubb    rnohomology  zebrafish
egohomology  hgu95e       mgu74av2     mu19ksubc    rnu34        zmahomology

The following packages will be updated soon:

indac    humanLLMappings    mouseLLMappings    ratLLMappings    cMAP   
hgug4100a   hgug4101a   hgug4111a   hgug4410a   hgug4410b   mgug4104a
mgug4120a   mgug4121a   mgug4122a   rgug4105a   rgug4130a   rgug4131a

Bug reports are highly appreciated. Thanks.


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