[Bioc-devel] bibtex support?

Martin Morgan mtmorgan at fhcrc.org
Thu Oct 12 17:58:21 CEST 2006

Just to clarify, I think this is occurring with the Windows build only
-- look in the .zip file for globaltest. Martin

Seth Falcon <sfalcon at fhcrc.org> writes:

> Vincent Carey 525-2265 <stvjc at channing.harvard.edu> writes:
>>>  Hi all,
>>> Does anybody have experience with using bibtex in vignettes? In the
>>> latest version of my package I switched to bibtex for managing the
>>> citations in the vignette of my package, including a .bib file in
>>> inst/doc. This seemed to work fine when I tested it myself. But in the
>>> final release vignette I see all my references replaced by question
>>> marks :-(.
>> i think it may be a reasonable request to add bibtex processing
>> into the build, but i don't know how easy it is to implement.
>> in the mean time, couldn't you add the contents of the .bbl file
>> to your Rnw as a literal included bibliography?  then as long
>> as latex is run twice i think you should have the citations
>> resolved?
>> then the build would (i think) need to run latex twice.
> Uh, I think this Just Works.  There are many existing packages that
> have a .bib file inside inst/doc and the references seem to be present
> in the vignettes.  Looks at GOstats and affycoretools, for example.
> + seth
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Martin T. Morgan
Bioconductor / Computational Biology

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