[Bioc-devel] Entrez URL not set in options

Seth Falcon sfalcon at fhcrc.org
Tue Oct 3 22:05:31 CEST 2006


Hi Mark,

"Kimpel, Mark William" <mkimpel at iupui.edu> writes:
> I am using R 2.4.0 RC with newly updated BioC packages. One of my
> previously working functions is giving me an error related to the fact
> that getOption("serviceUrl.entrez") returns NULL . Should something in
> BioC be setting this option? It has been set in BioC 1.8.

Not that I am aware of.  I did a quick text search of the R code in
the packages you mentioned: limma, affy, Biobase and see no mention of
serviceUrl.entrez in any of them (in 1.8 or 1.9).

+ seth



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