[Bioc-devel] Biobase eSet and exprSet validation

Rafael A. Irizarry ririzarr at jhsph.edu
Thu Feb 2 20:12:38 CET 2006

i agree that we should get rid of exprSet. the oligo package uses the eSet 
exclusiveley. but we need to be very careful not lose functionailty, for 
example, i know that exprs<- does not exist for eSet. i suspect this 
method is used in various places

On Thu, 2 Feb 2006, Vincent Carey 525-2265 wrote:

>> Now might also be a good time to replace any use of the deprecated
>> eset data with the new sample.eSet and sample.exprSet data sets.
> how about converting all serialized exprSets to eSets?  there is an "as" operator
> to help with this in Biobase...
> should we try to eliminate all reliance on exprSets?  it can only be
> confusing to newcomers that there are two basic containers
> doing the same thing.
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