[Bioc-devel] ANN: BioC Developer's Meeting/agenda/discussion

Gordon Smyth smyth at wehi.edu.au
Sun Jul 24 09:47:40 CEST 2005

At 01:34 PM 18/07/2005, Vincent Carey 525-2265 wrote:
> > Here are some specific problems:
> >
> > The limma package isn't mentioned under "Bayesian", "FactorialDesigns",
> > "TimeSeries" or "MultipleTesting", even though it is probably the most used
> > package in each of these categories.
> >
> > Limma isn't mentioned anywhere in any of the Preprocessing categories,
> > although it is one of the most used packages for non-affy pre-processing.
> > The preprocessing package arrayMagic package, for example, calls limma
> > functions to do normalization and pre-processing.
>and does limma call marray anymore?

limma has never had an dependence on marray. Following a suggestion of 
Wolgang's, it does call vsn.

Does this mean that you have never looked at limma? :-)


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