ranef.lme {nlme} | R Documentation |

## Extract lme Random Effects

### Description

The estimated random effects at level `i`

are represented as a
data frame with rows given by the different groups at that level and
columns given by the random effects. If a single level of
grouping is specified, the returned object is a data frame; else, the
returned object is a list of such data frames. Optionally, the
returned data frame(s) may be augmented with covariates summarized
over groups.

### Usage

```
## S3 method for class 'lme'
ranef(object, augFrame, level, data, which, FUN,
standard, omitGroupingFactor, subset, ...)
```

### Arguments

`object` |
an object inheriting from class |

`augFrame` |
an optional logical value. If |

`level` |
an optional vector of positive integers giving the levels of grouping to be used in extracting the random effects from an object with multiple nested grouping levels. Defaults to all levels of grouping. |

`data` |
an optional data frame with the variables to be used for
augmenting the returned data frame when |

`which` |
an optional positive integer vector specifying which
columns of |

`FUN` |
an optional summary function or a list of summary functions
to be applied to group-varying variables, when collapsing |

`standard` |
an optional logical value indicating whether the
estimated random effects should be "standardized" (i.e. divided by
the estimate of the standard deviation of that group of random
effects). Defaults to |

`omitGroupingFactor` |
an optional logical value. When |

`subset` |
an optional expression indicating for which rows the random effects should be extracted. |

`...` |
some methods for this generic require additional arguments. None are used in this method. |

### Value

a data frame, or list of data frames, with the estimated
random effects at the grouping level(s) specified in `level`

and,
optionally, other covariates summarized over groups. The returned
object inherits from classes `random.effects.lme`

and
`data.frame`

.

### Author(s)

JosÃ© Pinheiro and Douglas Bates bates@stat.wisc.edu

### References

Pinheiro, J.C., and Bates, D.M. (2000) "Mixed-Effects Models in S and S-PLUS", Springer, esp. pp. 100, 461.

### See Also

`coef.lme`

,
`gsummary`

,
`lme`

,
`plot.ranef.lme`

,
`random.effects`

### Examples

```
fm1 <- lme(distance ~ age, Orthodont, random = ~ age | Subject)
ranef(fm1)
random.effects(fm1) # same as above
random.effects(fm1, augFrame = TRUE)
```

*nlme*version 3.1-164 Index]