R: Foreign Function Interface

Foreign {base}

R Documentation

Foreign Function Interface

Description

Functions to make calls to compiled code that has been loaded into R.

Usage

       .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCODING)
 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCODING)

Arguments

`.NAME`	a character string giving the name of a C function or Fortran subroutine, or an object of class `"NativeSymbolInfo"`, `"RegisteredNativeSymbol"` or `"NativeSymbol"` referring to such a name.
`...`	arguments to be passed to the foreign function. Up to 65.
`NAOK`	if `TRUE` then any `NA` or `NaN` or `Inf` values in the arguments are passed on to the foreign function. If `FALSE`, the presence of `NA` or `NaN` or `Inf` values is regarded as an error.
`PACKAGE`	if supplied, confine the search for a character string `.NAME` to the DLL given by this argument (plus the conventional extension, ‘.so’, ‘.dll’, ...). This is intended to add safety for packages, which can ensure by using this argument that no other package can override their external symbols, and also speeds up the search (see ‘Note’).
`DUP`, `ENCODING`	For back-compatibility, accepted but ignored.

Details

These functions can be used to make calls to compiled C and Fortran code. Later interfaces are .Call and .External which are more flexible and have better performance.

These functions are primitive, and .NAME is always matched to the first argument supplied (which should not be named). The other named arguments follow ... and so cannot be abbreviated. For clarity, should avoid using names in the arguments passed to ... that match or partially match .NAME.

Value

A list similar to the ... list of arguments passed in (including any names given to the arguments), but reflecting any changes made by the C or Fortran code.

Argument types

The mapping of the types of R arguments to C or Fortran arguments is

R	C	Fortran
`integer`	`int *`	`integer`
`numeric`	`double *`	`double precision`
-- or --	`float *`	`real`
`complex`	`Rcomplex *`	`double complex`
`logical`	`int *`	`integer`
`character`	`char **`	[see below]
`raw`	`unsigned char *`	not allowed
`list`	`SEXP *`	not allowed
other	`SEXP`	not allowed

Note: The C types corresponding to integer and logical are int, not long as in S. This difference matters on most 64-bit platforms, where int is 32-bit and long is 64-bit (but not on 64-bit Windows).

Note: The Fortran type corresponding to logical is integer, not logical: the difference matters on some Fortran compilers.

Numeric vectors in R will be passed as type double * to C (and as double precision to Fortran) unless the argument has attribute Csingle set to TRUE (use as.single or single). This mechanism is only intended to be used to facilitate the interfacing of existing C and Fortran code.

The C type Rcomplex is defined in ‘Complex.h’ as a typedef struct {double r; double i;}. It may or may not be equivalent to the C99 double complex type, depending on the compiler used.

Logical values are sent as 0 (FALSE), 1 (TRUE) or INT_MIN = -2147483648 (NA, but only if NAOK = TRUE), and the compiled code should return one of these three values: however non-zero values other than INT_MIN are mapped to TRUE.

Missing (NA) string values are passed to .C as the string "NA". As the C char type can represent all possible bit patterns there appears to be no way to distinguish missing strings from the string "NA". If this distinction is important use .Call.

Using a character string with .Fortran is deprecated and will give a warning. It passes the first (only) character string of a character vector as a C character array to Fortran: that may be usable as character*255 if its true length is passed separately. Only up to 255 characters of the string are passed back. (How well this works, and even if it works at all, depends on the C and Fortran compilers and the platform.)

Lists, functions or other R objects can (for historical reasons) be passed to .C, but the .Call interface is much preferred. All inputs apart from atomic vectors should be regarded as read-only, and all apart from vectors (including lists), functions and environments are now deprecated.

Fortran symbol names

All Fortran compilers known to be usable to compile R map symbol names to lower case, and so does .Fortran.

Symbol names containing underscores are not valid Fortran 77 (although they are valid in Fortran 9x). Many Fortran 77 compilers will allow them but may translate them in a different way to names not containing underscores. Such names will often work with .Fortran (since how they are translated is detected when R is built and the information used by .Fortran), but portable code should not use Fortran names containing underscores.

Use .Fortran with care for compiled Fortran 9x code: it may not work if the Fortran 9x compiler used differs from the Fortran compiler used when configuring R, especially if the subroutine name is not lower-case or includes an underscore. The most portable way to call Fortran 9x code from R is to use .C and the Fortran 2003 module iso_c_binding to provide a C interface to the Fortran code.

Copying of arguments

Character vectors are copied before calling the compiled code and to collect the results. For other atomic vectors the argument is copied before calling the compiled code if it is otherwise used in the calling code.

Non-atomic-vector objects are read-only to the C code and are never copied.

This behaviour can be changed by setting options(CBoundsCheck = TRUE). In that case raw, logical, integer, double and complex vector arguments are copied both before and after calling the compiled code. The first copy made is extended at each end by guard bytes, and on return it is checked that these are unaltered. For .C, each element of a character vector uses guard bytes.

Note

If one of these functions is to be used frequently, do specify PACKAGE (to confine the search to a single DLL) or pass .NAME as one of the native symbol objects. Searching for symbols can take a long time, especially when many namespaces are loaded.

You may see PACKAGE = "base" for symbols linked into R. Do not use this in your own code: such symbols are not part of the API and may be changed without warning.

References

Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988) The New S Language. Wadsworth & Brooks/Cole.