Provides a graphical user interface to integrate, visualize and explore results
from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid
species. The app is meant for interactive use and allows users to optionally upload different sources
of information, including gene annotation and alignment files, enabling the exploitation and search for
candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly',
'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.
| Version: |
0.4.1 |
| Depends: |
R (≥ 4.0) |
| Imports: |
shiny (≥ 1.6.0), shinyjs, shinythemes, shinyWidgets, shinydashboard, config (≥ 0.3.1), golem (≥ 0.3.1), JBrowseR, dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind, reshape2, markdown, stats, hidecan, purrr |
| Suggests: |
testthat (≥ 3.0.0), shinytest, rlang, pkgload, vdiffr |
| Published: |
2024-03-28 |
| DOI: |
10.32614/CRAN.package.viewpoly |
| Author: |
Cristiane Taniguti [aut, cre],
Gabriel de Siqueira Gesteira [aut],
Jeekin Lau [aut],
Olivia Angelin-Bonnet [aut],
Susan Thomson [ctb],
Guilherme da Silva Pereira [ctb],
David Byrne [ctb],
Zhao-Bang Zeng [ctb],
Oscar Riera-Lizarazu [ctb],
Marcelo Mollinari [aut] |
| Maintainer: |
Cristiane Taniguti <chtaniguti at tamu.edu> |
| BugReports: |
https://github.com/mmollina/viewpoly/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/mmollina/viewpoly |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README, NEWS |
| CRAN checks: |
viewpoly results |