syncons: Efficient and Low-Cost Construction of Synthetic Communities
Provides functions and a Shiny application to design plate
layouts for constructing synthetic communities (SynComs) from a pool
of strains using 24-, 96- and 384-well microplates. The method
generates all possible strain combinations in a scalable, low-cost
workflow suitable for high-throughput experiments.
Reference: Tian et al. (2024) <doi:10.21769/BioProtoc.2405576>.
| Version: |
0.1.1 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
dplyr, DT, glue, purrr, shiny, stringr, tibble, tidyr, utils |
| Published: |
2026-08-05 |
| DOI: |
10.32614/CRAN.package.syncons (may not be active yet) |
| Author: |
Chun-Hui Gao 
[aut, cre] |
| Maintainer: |
Chun-Hui Gao <gaospecial at gmail.com> |
| BugReports: |
https://github.com/gaospecial/syncons/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/gaospecial/syncons,
https://doi.org/10.21769/BioProtoc.2405576,
https://bio-spring.shinyapps.io/SynComsConstructor/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
syncons results |
Documentation:
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