symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.biorxiv.org/content/10.1101/2020.11.18.389189v2>.

Version: 0.1.0
Depends: R (≥ 2.10)
Imports: methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr, ggplot2, stats, utils, magrittr, data.table, tibble, Matrix, tidyr, rlang, RColorBrewer, ggrastr, ggrepel, RANN
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, ggthemes
Published: 2021-08-05
Author: Joyce Kang ORCID iD [aut, cre], Ilya Korsunsky ORCID iD [aut], Soumya Raychaudhuri ORCID iD [aut]
Maintainer: Joyce Kang <joyce_kang at hms.harvard.edu>
License: GPL (≥ 3)
NeedsCompilation: yes
Materials: README
CRAN checks: symphony results

Documentation:

Reference manual: symphony.pdf
Vignettes: Quickstart PBMCs Tutorial

Downloads:

Package source: symphony_0.1.0.tar.gz
Windows binaries: r-devel: symphony_0.1.0.zip, r-release: symphony_0.1.0.zip, r-oldrel: symphony_0.1.0.zip
macOS binaries: r-release (arm64): symphony_0.1.0.tgz, r-release (x86_64): symphony_0.1.0.tgz, r-oldrel: symphony_0.1.0.tgz

Linking:

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