scPloidy: Infer Ploidy of Single Cells

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <>.

Version: 0.3.0
Depends: R (≥ 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, matrixStats, mixtools, rlang, Rsamtools, utils
Suggests: IRanges, knitr, readr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-09-12
Author: Fumihiko Takeuchi ORCID iD [aut, cre]
Maintainer: Fumihiko Takeuchi <fumihiko at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: scPloidy results


Reference manual: scPloidy.pdf
Vignettes: intro


Package source: scPloidy_0.3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): scPloidy_0.3.0.tgz, r-oldrel (arm64): scPloidy_0.3.0.tgz, r-release (x86_64): scPloidy_0.3.0.tgz, r-oldrel (x86_64): scPloidy_0.3.0.tgz


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