prevalence 0.4.1 ================ * updated DESCRIPTION and NAMESPACE prevalence 0.4.0 ================ * new method `as.matrix` for objects of class `prev` * add SE, SP to `truePrev` and `truePrevPools` output * fixed some documentation typos * updated website and email address * updated Description field to fix CRAN note prevalence 0.3.0 ================ * new function `truePrevMulti2`, implementing a covariance scheme for estimating TP from AP obtained with multiple tests * new function `define_prior2` to show the definition of the priors used by `truePrevMulti2` * definition of `x` in `truePrevMulti` is reversed; first element of `x` now is the number of samples positive on all tests, last element of `x` is the number of samples negative on all tests * 'definition' functions renamed to `define_x` and `define_prior` * functions `truePrev` and `truePrevPools` lost args `conf.level` and `plot` * function `betaPERT` lost args `p` and `plot` * print method for objects of class `prev` no longer shows percentages * various code cleanups and small bug and typo fixes