pmsims: Simulation-based Sample Size Tools for Prediction Models

pmsims is an R package for estimating how much data are needed to develop reliable and generalisable prediction models. It uses a simulation-based learning curve approach to quantify how model performance improves with increasing sample size, supporting principled study planning and feasibility assessment.

The package is fully model-agnostic: users can define how data are generated, how models are fitted, and how predictive performance is measured. Built-in workflows cover continuous, binary, and time-to-event outcomes, with a choice of regression-based models (linear, logistic, and Cox) and machine-learning models (regularised regression, random forest, and XGBoost).

Developed at King’s College London (Department of Biostatistics & Health Informatics) with input from researchers, clinicians, and patient partners. See the pmsims project site for further details.

Installation

Install the stable 1.0.0 release from GitHub:

# install.packages("remotes")
remotes::install_github("pmsims-package/pmsims", ref = "v1.0.0")

If you are interested in trying the development version, install from the dev branch:

# install.packages("remotes")
remotes::install_github("pmsims-package/pmsims", ref = "dev")

The development version includes work in progress and may change before the next tagged release.

Minimal example

library(pmsims)
set.seed(123)

binary_example <- simulate_binary(
  signal_parameters = 10,
  noise_parameters = 10,
  complexity = 2,
  data_control = list(
    nonlinear_strength = 0.4,
    correlation = 0.2
  ),
  outcome_prevalence = 0.20,
  maximum_achievable_cstatistic = 0.75,
  model = "glm",
  metric = "calibration_slope",
  target_performance = 0.90,
  n_reps_total = 1000,
  mean_or_assurance = "assurance"
)

binary_example

maximum_achievable_cstatistic and target_performance have different roles:

maximum_achievable_cstatistic represents the best plausible C-statistic with effectively unlimited data and calibrates the data generator.
target_performance is the minimum acceptable metric value used to determine the required sample size.

Citing pmsims

If you use pmsims, please cite the package and either or both accompanying papers.

The validation paper:

Olaniran OR, Shamsutdinova D, Markham S, Zimmer F, Stahl D, Forbes G, Carr E (2026). Adaptive Gaussian process search for simulation-based sample size estimation in clinical prediction models: validation of the pmsims R package. BMC Medical Research Methodology. https://doi.org/10.1186/s12874-026-02935-9

The overview paper, currently a preprint:

Shamsutdinova D, Zimmer F, Olaniran OR, Markham S, Stahl D, Forbes G, Carr E (2026). Sample Size Calculations for Developing Clinical Prediction Models: Overview and pmsims R package. arXiv. https://arxiv.org/abs/2602.23507

Once the overview paper is published, that citation should be updated to the peer-reviewed version. In R, you can retrieve the package citation with:

citation("pmsims")

Get in touch

We welcome questions, suggestions, and collaboration enquiries.

Email: pmsims@kcl.ac.uk
Feedback or bugs: please open a GitHub issue

Funding

This work is supported by the National Institute for Health and Care Research (NIHR) under the Research for Patient Benefit (RfPB) Programme (NIHR206858).

NIHR and KCL logos

The views expressed are those of the authors and not necessarily those of the NIHR or the Department of Health and Social Care.