occumb: Site Occupancy Modeling for Environmental DNA Metabarcoding

Fits multispecies site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>.

Version: 1.1.0
Depends: jagsUI, R (≥ 2.10)
Imports: stats, methods, graphics, checkmate, crayon, knitr
Suggests: rmarkdown, spelling, testthat (≥ 3.0.0)
Published: 2024-03-26
Author: Keiichi Fukaya [aut, cre], Ken Kellner [cph] (summary method for occumbFit class)
Maintainer: Keiichi Fukaya <fukayak99 at gmail.com>
BugReports: https://github.com/fukayak/occumb/issues
License: GPL (≥ 3)
URL: https://fukayak.github.io/occumb/, https://github.com/fukayak/occumb
NeedsCompilation: no
SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net)
Language: en-US
Materials: README NEWS
CRAN checks: occumb results

Documentation:

Reference manual: occumb.pdf
Vignettes: Model specification in occumb()
Introduction to occumb

Downloads:

Package source: occumb_1.1.0.tar.gz
Windows binaries: r-prerel: occumb_1.1.0.zip, r-release: occumb_1.1.0.zip, r-oldrel: occumb_1.1.0.zip
macOS binaries: r-prerel (arm64): occumb_1.1.0.tgz, r-release (arm64): occumb_1.1.0.tgz, r-oldrel (arm64): occumb_1.1.0.tgz, r-prerel (x86_64): occumb_1.1.0.tgz, r-release (x86_64): occumb_1.1.0.tgz
Old sources: occumb archive

Linking:

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