mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to analyze proteomic workflows including number of identifications, data completeness, missed cleavages, quantitative and retention time precision etc. Various software outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'.

Version: 0.1.5
Imports: comprehenr, data.table, dplyr, flowTraceR, forcats, ggplot2, magrittr, plotly, purrr, stats, stringr, tibble, tidyr, UpSetR
Suggests: flextable, knitr, rmarkdown, testthat (≥ 3.0.0), utils
Published: 2023-11-13
Author: Oliver Kardell [aut, cre]
Maintainer: Oliver Kardell <Okdll at gmx.net>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: mpwR results

Documentation:

Reference manual: mpwR.pdf
Vignettes: Import
Output_Explanations
Requirements
Workflow

Downloads:

Package source: mpwR_0.1.5.tar.gz
Windows binaries: r-devel: mpwR_0.1.5.zip, r-release: mpwR_0.1.5.zip, r-oldrel: mpwR_0.1.5.zip
macOS binaries: r-release (arm64): mpwR_0.1.5.tgz, r-oldrel (arm64): mpwR_0.1.5.tgz, r-release (x86_64): mpwR_0.1.5.tgz
Old sources: mpwR archive

Linking:

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