metaGE: Meta-Analysis for Detecting Genotype x Environment Associations
Meta-analysis of genome-wide association studies for studying
Genotype x Environment interactions. The 4 main functions of the
package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test()
correspond to 4 steps to perform the meta-analysis: Collecting the
results of genome-wide association studies data from different files;
Inferring the inter-environment correlation matrix; Performing global
test procedure for quantitative trait loci detection (using a Fixed or
Random effect model); Performing tests of contrast or meta-regression
using an environmental co-factor. (De Walsche, A., et al. (2023)
<doi:10.1101/2023.03.01.530237>).
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.0.2) |
| Imports: |
corrplot, data.table, dplyr, emdbook, future, ggplot2, ggrepel, gplots, graphics, grDevices, ks, purrr, qqman, Rfast, stats, stringr, tibble, tidyr, utils, viridis |
| Suggests: |
DT, knitr, rmarkdown, tidyverse |
| Published: |
2023-09-28 |
| Author: |
Annaïg De Walsche 
[aut, cre],
Tristan Mary-Huard
[aut] |
| Maintainer: |
Annaïg De Walsche <annaig.de-walsche at inrae.fr> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| In views: |
MetaAnalysis |
| CRAN checks: |
metaGE results |
Documentation:
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