genekitr: Gene Analysis Toolkit

An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records, to convert id types, to easily handle gene enrichment analysis and publication-level figures, to plot group interaction and export results as sheets in one 'excel' file to easily share and communicate with others.

Version: 1.0.8
Depends: R (≥ 3.6)
Imports: clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2, ggraph, igraph, magrittr, openxlsx, stringr, stringi, tidyr, VennDiagram, rlang
Suggests: AnnotationDbi, BiocManager, cowplot, ComplexUpset, data.table, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, labeling, msigdbr, pheatmap, tm, treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, wordcloud, knitr, rmarkdown
Published: 2022-11-23
Author: Yunze Liu ORCID iD [aut, cre]
Maintainer: Yunze Liu <jieandze1314 at gmail.com>
BugReports: https://github.com/GangLiLab/genekitr/issues
License: GPL-3
URL: https://www.genekitr.fun/
NeedsCompilation: no
Materials: README
CRAN checks: genekitr results

Documentation:

Reference manual: genekitr.pdf

Downloads:

Package source: genekitr_1.0.8.tar.gz
Windows binaries: r-devel: genekitr_1.0.8.zip, r-release: not available, r-oldrel: genekitr_1.0.8.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): genekitr_1.0.8.tgz, r-oldrel (x86_64): genekitr_1.0.8.tgz
Old sources: genekitr archive

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