geneNR 2.0.1
New Functions and Features
geneQTL
: Identifies candidate genes
based on Quantitative Trait Loci (QTL) analysis.
import_hmp
: Enables importing Hapmap
genotypic data files.
import_vcf
: Provides support for
importing VCF (Variant Call Format) data files.
plot_SNP
: Visualizes SNP distribution
on a chromosome map.
plot_summariseSNP
: Plots SNP
distribution across chromosomes.
summariseSNP
: Calculates SNP
distribution across chromosomes.
summariseSNP_vcf
: Calculates SNP
distribution across chromosomes from VCF data.
Sample Data Additions
sample_data_rice
,
sample_data_rice_qtl
: Added rice sample
datasets.
sample_data_wheat
,
sample_data_wheat_custom
,
sample_data_wheat_qtl
: Added wheat sample
datasets.
Enhancements
- Improved functionality and performance of existing features.
- Updated documentation for better clarity and usability.