fitPoly: Genotype Calling for Bi-Allelic Marker Assays

Genotyping assays for bi-allelic markers (e.g. SNPs) produce signal intensities for the two alleles. 'fitPoly' assigns genotypes (allele dosages) to a collection of polyploid samples based on these signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011) <doi:10.1186/1471-2105-12-172>. New functions added on conversion of data from SNP array software formats, drawing of XY-scatterplots with or without genotype colors, checking against expected F1 segregation patterns, comparing results from two different assays (probes) for the same SNP, recovery from a saveMarkerModels() crash.

Version:	4.0.0
Depends:	R (≥ 3.2.0)
Imports:	foreach, devEMF, doParallel, grDevices
Suggests:	knitr, rmarkdown
Published:	2025-02-13
DOI:	10.32614/CRAN.package.fitPoly
Author:	Roeland E. Voorrips [aut], Gerrit Gort [aut], Alejandro Therese Navarro [aut], Giorgio Tumino [aut, cre]
Maintainer:	Giorgio Tumino <giorgio.tumino at wur.nl>
License:	GPL-2
NeedsCompilation:	no
Materials:	README
CRAN checks:	fitPoly results

Documentation:

Reference manual:	fitPoly.html , fitPoly.pdf
Vignettes:	Data import and preparation (source, R code) Analysis of F1 scores (source, R code)

Downloads:

Package source:	fitPoly_4.0.0.tar.gz
Windows binaries:	r-devel: fitPoly_4.0.0.zip, r-release: fitPoly_4.0.0.zip, r-oldrel: fitPoly_4.0.0.zip
macOS binaries:	r-release (arm64): fitPoly_4.0.0.tgz, r-oldrel (arm64): fitPoly_4.0.0.tgz, r-release (x86_64): fitPoly_4.0.0.tgz, r-oldrel (x86_64): fitPoly_4.0.0.tgz
Old sources:	fitPoly archive

Reverse dependencies:

Reverse suggests:

mappoly

Linking:

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